fix(deps): read dependency groups, included requirements files, optional and target dependencies - #3426

fix(deps): read dependency groups, included requirements files, optional and target dependencies#3426

kenny-ish wants to merge 2 commits into

vitali87:mainvitali87/code-graph-rag:mainfrom

kenny-ish:fix-manifest-secondary-sectionskenny-ish/code-graph-rag:fix-manifest-secondary-sectionsCopy head branch name to clipboard