supermatrix

A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine sequences aligned or not — all from the terminal.

scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms

a tool for automatic construction of molecular data matrix for phylogenetic inference based on GenBank records

This repository provides an easy-to-use Python-based pipeline for reconstructing phylogenetic trees from whole bacterial genomes. It automates the process of identifying orthologous single-copy genes, aligning sequences, trimming alignments, and generating a concatenated supermatrix ready for phylogenetic analysis. The pipeline requires only .fasta

in depth analysis of heteropecillious sites in supermatrices

🐹 Building a tree of some small fluffy animals