phage-host-prediction

Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding proteins of phages. It presents improvements over using handcrafted sequence properties and eliminates the need to manually extract and select features from phage sequences

This is the repository for GraphPhage, a phage analysis tool that integrates phage and ICE discrimination, phage integration site prediction, phage lifestyle prediction, and phage host prediction.

Published in Bioinformatics. Phage-host interaction prediction tool that incorporates protein structure information in representing receptor-binding proteins (RBPs). It improves performance especially for phages with RBPs that have low sequence similarity to those of known phages

A multi-level prediction of interaction between bacteriophages and pathogenic bacterial hosts

A snakemake workflow wrapping various phage host prediction tools

GIMa (Genomic Islands in Mycobacterium abscessus) : A genomic island detection tool calibrated for Mycobacteroides abscessus clinical genomics

Sequence-based workflow for building candidate phage–host associations from BLAST evidence, with reproducible HPC/Slurm execution and genome-level features.