euclidean-distance-transform

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seung-lab / euclidean-distance-transform-3d

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

python algorithm cpp numpy parallel neuroscience signed-distance-field connectomics signed-distance-functions distance-transform 3d 2d biomedical-image-processing 1d anisotropy euclidean-distance anisotropic euclidean-distance-transform marching-parabolas

Updated Aug 24, 2026
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Tarang74 / OsteonX

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A Python library for osteocyte network analysis using confocal laser scanning microscopy data segmented with the Tool for Image and Network Analysis (TINA), providing lamellar surface reconstruction and temporal quantification of cellular and dendritic densities via interpolated 3D Euclidean distance transforms (MLAEDT-3D).

mathematical-biology edt euclidean-distance-transform lamella osteocyte osteon