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contact-prediction

Here are 8 public repositories matching this topic...

Urinx / alphafold_pytorch

An implementation of the DeepMind's AlphaFold based on PyTorch for research

deep-learning contact-prediction structure-prediction protein-structure-prediction pytorch-implementation alphafold casp13

Updated Jan 23, 2021
Python

elttaes / Revisiting-PLMs

Exploring Evolution-aware & free protein language models as protein function predictors

benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding

Updated Sep 28, 2024
Python

psipred / DeepCov

Fully convolutional neural networks for protein residue-residue contact prediction

protein-structure contact-prediction

Updated Mar 25, 2019
Python

rigdenlab / conkit

Contact Prediction ToolKit

python contact-prediction

Updated Jul 23, 2026
Python

soedinglab / CCMgen

dca contact-prediction

Updated Jul 16, 2021
HTML

psipred / DeepMetaPSICOV

Deep ResNet-based protein contact prediction

deep-learning protein-structure resnet contact-prediction

Updated Mar 30, 2020
C

psipred / metapsicov

Consensus Structural contact prediction

proteins contacts contact-prediction

Updated Apr 8, 2019
C

Marksssc / spininfer

Multi-backend inference of Ising and Potts models (mean-field, adaptive cluster expansion, maximum likelihood, pseudolikelihood) on CPU and GPU, with applications to neuroscience and protein contact prediction.

neuroscience statistical-mechanics ising-model numba contact-prediction inverse-problems maximum-likelihood statistical-physics maximum-entropy maximum-likelihood-estimation cupy potts-model contact-predictions jax inverse-problem direct-coupling-analysis

Updated Oct 9, 2026
Python

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