calcium

An interactive image processing program for biologists written in Python.

A ascii/text game library

A simple GUI for automatic and manual alignment across calcium imaging sessions.

Package for removing motion artifacts from two-channel imaging

Calcium combines the functionality of a digital whiteboard with a code editor and a terminal. It provides a versatile platform for collaborative brainstorming.

Signal Processing Toolbox for Calcium Imaging Data

These are tutorials I am making for using Neuro-Collection with ug4

Batch calcium-flux analysis macro for Fiji/ImageJ with automated baseline correction, peak detection and batch reporting.

This is MATLAB script created and used via the Trinkaus-Randall Lab at Boston University for the analysis of epithelial cellular calcium signaling during wound healing.

Epithelial water and solute transport along the nephron with a focus on calcium transport and regulation.

Code to simulate excitation-contraction coupling in cardiac cells using FE methods

CalciumImaging analysis matlab pipeline for suite2p outputs

Interpretable machine learning framework for predicting mid-term mortality and major periprocedural complications after transcatheter aortic valve implantation (TAVI) using pre-procedural clinical, echocardiographic, CT, and cusp-specific aortic valve calcium topography data. Includes reproducible survival and classification pipelines following TRI

Scripts for extraction and analysis of widefield calcium data from awake behaving mice.

A Data Manipulation and Analysis Package for Calcium Indicator and Waveform Data

Calcium imaging pipeline for R

Calcium wave simulation scripts

repository for R code from https://doi.org/10.5194/bg-18-2573-2021

Code for IEEE ISBI 2018 publication.