Parallel/Homoplasic SNP Finder
datasets shared on figshare
CladeForge — a local-first, cross-platform interactive phylogenetic tree editor for evolutionary scenario construction and hypothesis generation (Tauri v2 + React + TypeScript + Rust).
Public repository exposing research work on age of bird calls (can be applied beyond birds) - as part of our research publication
Paper - A novel function of banded stripes to prevent cannibalism in snake-eating snakes
Miscellaneous micro-projects from my Master’s degree focused on phylogenetics and evolution: Bayesian and maximum likelihood phylogenies, concatenated vs coalescent analyses, ancestral state reconstruction, divergence dating, gene flow, and substitution models.
A package written for my PhD thesis research. The one can perform reconstruction of the climatic niche of a species using this. Documentation not finished yet.
A (not so) basic course of comparative biology.
Bayesian ancestral reconstruction of protein language-model embeddings — BM/OU phylogenetic trait models in Stan, with pure-R reference implementations
Repository for the Paper about fossil anacondas from Urumaco
An efficient algorithm for parsimony-based reconstructions of the evolutionary history of individual metabolic pathways.
Indel viewer software for ARPIP
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