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@sys-bio

UW Sauro Lab

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  1. tellurium tellurium Public

    Python Environment for Modeling and Simulating Biological Systems

    Python 146 41

  2. roadrunner roadrunner Public

    Forked from AndySomogyi/sbmlsolver

    libRoadRunner: A high-performance SBML simulator

    C++ 63 31

Repositories

Showing 10 of 130 repositories
  • roadrunner Public Forked from AndySomogyi/sbmlsolver

    libRoadRunner: A high-performance SBML simulator

    sys-bio/roadrunner's past year of commit activity
    C++ 63 39 80 (1 issue needs help) 4 Updated Oct 13, 2026
  • pbg2sed2 Public

    A translator of process bigraph files to SED2.

    sys-bio/pbg2sed2's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 13, 2026
  • SED2 Public
    sys-bio/SED2's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 12, 2026
  • pySED2Translate Public

    A translator from SED2 to a python script, using libSED2.

    sys-bio/pySED2Translate's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 12, 2026
  • sed2-test-suite Public

    A test suite for interpreters of SED2 documents

    sys-bio/sed2-test-suite's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 12, 2026
  • PathwayDesigner-rs Public
    sys-bio/PathwayDesigner-rs's past year of commit activity
    Rust 0 MIT 0 0 0 Updated Oct 12, 2026
  • bifurcata-rs Public
    sys-bio/bifurcata-rs's past year of commit activity
    Rust 0 0 0 0 Updated Oct 9, 2026
  • websim Public
    sys-bio/websim's past year of commit activity
    Rust 0 0 0 0 Updated Oct 9, 2026
  • AAAIM Public

    AI-Assisted Automated Annotation of Models

    sys-bio/AAAIM's past year of commit activity
    Jupyter Notebook 4 MIT 3 0 1 Updated Oct 9, 2026
  • WebIridium2 Public Forked from sys-bio/WebIridium

    Web-based simulation and analysis of biological models

    sys-bio/WebIridium2's past year of commit activity
    TypeScript 0 3 3 0 Updated Sep 29, 2026
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