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1. sundew-segmenting sundew-segmenting Public

   Reproducible sundew image acquisition, curation, annotation, and segmentation research pipeline

   Python

2. af3-to-amber-md-sim af3-to-amber-md-sim Public

   Takes an AlphaFold3 protein–DNA model through ChimeraX cleanup, tleap topology building, and a staged equilibration and production MD run on a Slurm cluster, for a wild-type and a mutant system in …

   Shell 3

3. corn-nutrient-response corn-nutrient-response Public

   Multivariate analysis of a 34 site-year Nebraska corn nutrient-response field trial

   R 3

4. brain-mri-imaging brain-mri-imaging Public

   A convolutional network trained on 32×32 tumor patches from axial T1 post-contrast slices.

   Jupyter Notebook 3

5. ml-methods-health-data ml-methods-health-data Public

   Four machine learning method families on public medical data: classification, clustering, association rules and regression, sharing one gated pipeline

   Python 3

6. plate-well-mapper plate-well-mapper Public

   CLI for Pierce BCA 96-well plate maps, Gen5 read mapping, and analysis

   Python