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HPCing
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HPCing
50 followers · 36 following

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Organizations

@HCEMM

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iquasere/README.md

Hi there! 👋

I was a PhD student, using bioinformatics to "Uncover the role of conductive nanomaterials in anaerobic digestion".

Tools for meta-omics analyses

My work has mostly been the development of tools for analyses of meta-omics data, i.e., the study of the collective genomes, transcriptomes or proteomes of a microbial community.

These are the main tools I have developed for meta-omics analyses:

UPIMAPI, reCOGnizer and KEGGCharter

UPIMAPI, reCOGnizer and KEGGCharter are tools developed for the analyses of omics data, and optimized for handling the challenges of meta-omics.

MOSCA

MOSCA is a powerful pipeline developed for metagenomics (MG), metatranscriptomics (MT) and metaproteomics (MP) integrated analyses.

Finally, some metrics about my coding routine:

Code Time

AI Code Time

I'm an Early 🐤

🌞 Morning                1548 commits        ██████░░░░░░░░░░░░░░░░░░░   24.37 % 
🌆 Daytime                3300 commits        █████████████░░░░░░░░░░░░   51.94 % 
🌃 Evening                1173 commits        █████░░░░░░░░░░░░░░░░░░░░   18.46 % 
🌙 Night                  332 commits         █░░░░░░░░░░░░░░░░░░░░░░░░   05.23 %

📅 I'm Most Productive on Wednesday

Monday                   1077 commits        ████░░░░░░░░░░░░░░░░░░░░░   16.95 % 
Tuesday                  1420 commits        ██████░░░░░░░░░░░░░░░░░░░   22.35 % 
Wednesday                1693 commits        ███████░░░░░░░░░░░░░░░░░░   26.65 % 
Thursday                 893 commits         ████░░░░░░░░░░░░░░░░░░░░░   14.06 % 
Friday                   811 commits         ███░░░░░░░░░░░░░░░░░░░░░░   12.77 % 
Saturday                 36 commits          ░░░░░░░░░░░░░░░░░░░░░░░░░   00.57 % 
Sunday                   423 commits         ██░░░░░░░░░░░░░░░░░░░░░░░   06.66 %

📊 This Week I Spent My Time On

💬 Programming Languages: 
YAML                     5 hrs 27 mins       ██████████████████████░░░   89.34 % 
Markdown                 25 mins             ██░░░░░░░░░░░░░░░░░░░░░░░   06.86 % 
Nginx configuration file 5 mins              ░░░░░░░░░░░░░░░░░░░░░░░░░   01.39 % 
JSON                     3 mins              ░░░░░░░░░░░░░░░░░░░░░░░░░   00.99 % 
INI                      3 mins              ░░░░░░░░░░░░░░░░░░░░░░░░░   00.90 % 

🐱‍💻 Projects: 
ansible-puli             6 hrs 6 mins        █████████████████████████   100.00 %

🤖 AI Coding This Week

No AI Coding Activity Tracked This Week

I Mostly Code in Python

Python                   11 repos            ████████░░░░░░░░░░░░░░░░░   31.43 % 
HTML                     10 repos            ███████░░░░░░░░░░░░░░░░░░   28.57 % 
Java                     4 repos             ███░░░░░░░░░░░░░░░░░░░░░░   11.43 % 
Shell                    2 repos             █░░░░░░░░░░░░░░░░░░░░░░░░   05.71 % 
JavaScript               1 repo              █░░░░░░░░░░░░░░░░░░░░░░░░   02.86 %

Last Updated on 13/10/2026 23:17:48 UTC

Pinned Loading

  1. reCOGnizer reCOGnizer Public

    A tool for domain based annotation with databases from the Conserved Domains Database

    HTML 29 3

  2. UPIMAPI UPIMAPI Public

    UniProt Id Mapping through API

    Python 39 5

  3. KEGGCharter KEGGCharter Public

    A tool for representing genomic potential and transcriptomic expression into KEGG pathways

    Python 63 7

  4. MOSCA MOSCA Public

    Meta-Omics Software for Community Analysis

    Python 36 7

  5. annotation_paper annotation_paper Public

    UPIMAPI, reCOGnizer and KEGGCharter: bioinformatics tools for fast functional annotation and visualization of (meta)-omics datasets

    Python 4

  6. MOSGUITO MOSGUITO Public

    MOSca's GUI TO perform meta-omics analyses

    HTML 2 2