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@ctmrbio

CTMR

Centre for Translational Microbiome Research

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  1. stag-mwc stag-mwc Public

    StaG Metagenomic Workflow Collaboration

    Python 28 13

  2. optivag optivag Public

    Database for annotating vaginal communities

    Python 1 2

  3. bioinformatics_curriculum bioinformatics_curriculum Public

    Some ideas on things to learn to get started with bioinformatics

    19 7

  4. sm3 sm3 Public

    Simple Snakemake example

    Python 1

  5. run_in_parallel run_in_parallel Public

    Run simple commands in parallel on Slurm

    Python

Repositories

Showing 10 of 34 repositories
  • SweMaMi_sPTB Public

    SweMaMi preterm birth prediction.

    ctmrbio/SweMaMi_sPTB's past year of commit activity
    0 0 0 0 Updated May 12, 2026
  • ML_swemami Public

    Machine learning code used for SweMaMi study on miscarriage

    ctmrbio/ML_swemami's past year of commit activity
    2 0 0 0 Updated May 12, 2026
  • claritylims Public

    Customizations for our GenoLogics BaseSpace Clarity LIMS

    ctmrbio/claritylims's past year of commit activity
    Python 2 MIT 2 17 4 Updated Apr 13, 2026
  • strain_tracking Public

    Code for pregnancy and mother-infact strain tracking project

    ctmrbio/strain_tracking's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 17, 2026
  • 157_Screesco Public

    Analyses related to the SCREESCO/Oncobiome project (157 SCREESCO)

    ctmrbio/157_Screesco's past year of commit activity
    HTML 0 1 0 0 Updated Dec 15, 2025
  • 232_FOCUS Public

    Analyses related to the FOCUS/Oncobiome projects (232 OncDutch)

    ctmrbio/232_FOCUS's past year of commit activity
    Python 0 1 0 0 Updated Dec 15, 2025
  • rstudio_singularity Public

    Run Rstudio with Singularity

    ctmrbio/rstudio_singularity's past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jun 13, 2025
  • crc-survival Public

    Code for Tumor Microbiome is associated with survival in late stage colorectal cancer

    ctmrbio/crc-survival's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Dec 12, 2024
  • valody Public

    A tool to assign VAginaL DYnamic categories to individuals based on their Valencia CST assignments

    ctmrbio/valody's past year of commit activity
    Python 2 MIT 1 1 0 Updated Sep 30, 2024
  • stag-mwc Public

    StaG Metagenomic Workflow Collaboration

    ctmrbio/stag-mwc's past year of commit activity
    Python 28 MIT 13 4 (1 issue needs help) 1 Updated Aug 20, 2024
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