Bioinformatics at Małopolska Centre of Biotechnology

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1. gisaid-scrapper gisaid-scrapper Public

   Scrapping tool for GISAID data regarding SARS-CoV-2

   Python 41 16

2. MANIAC MANIAC Public

   Computation of average nucleotide identity with the use of MMseqs2

   Python 24 2

3. metagenome_assembly metagenome_assembly Public

   WDL Workflow for metagenome assembly

   Python 11 4

4. DeepFRI DeepFRI Public

   Forked from flatironinstitute/DeepFRI

   Deep functional residue identification

   Python 7

5. sra-downloader sra-downloader Public

   A script for batch-downloading data from SRA built on SRA-Toolkit.

   Python 5 2

6. qiime2-api-tutorials qiime2-api-tutorials Public

   QIIME 2 tutorials using the Artifact API

   Jupyter Notebook 4 5