Computational biologist in Perth, Australia, studying how microbes and viruses shape early-life health. I'm part of the Immunology and Breastfeeding team at The Kids Research Institute Australia and The University of Western Australia.
🧬 Research: respiratory & gut microbiome and virome · human milk · multi-omics integration
🛠️ I build: reproducible Nextflow/nf-core and Snakemake pipelines, and interactive Shiny apps that make omics data easier to explore
🌎 Colombian in Australia · ¡hablo español!
| Project | What it does |
|---|---|
| everest_nf | EVEREST, a pipeline for viral assembly and characterisation, rebuilt in Nextflow DSL2 using the nf-core template. Runs with Docker, Singularity or Conda. |
| EVEREST_meta | Snakemake version of EVEREST for metagenomics, for virus and phage discovery from paired-end or single-end reads.  |
| Project | What it does |
|---|---|
| MicrobialExplorer | Microbiome and virome analysis platform with a Shiny web interface |
| limma-deg-explorer | Parallel R and Python Shiny apps for RNA-seq differential expression and GO enrichment · R app · Python app |
| Project | What it does |
|---|---|
| target-methylseq-qc | Lightweight Nextflow pipeline collecting Picard metrics for targeted methylation sequencing ·  |
| Project | What it does |
|---|---|
| cv-timeline | Turn a spreadsheet of your CV into a timeline of concurrent roles, for promotion and grant applications · live demo |
Nextflow · nf-core · Snakemake · R · Shiny · Python · Bash · Docker · Singularity · Conda · HPC (Pawsey Setonix)
Website · Google Scholar · ORCID · X
Always happy to chat about microbiome and virome bioinformatics, reproducible pipelines, or collaborations.