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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1.2k 268

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 935 183

  3. aisdk aisdk Public

    🤖 A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    33 10

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 143 repositories
  • Rho Public

    an agent-native desktop workbench for R

    YuLab-SMU/Rho's past year of commit activity
    33 AGPL-3.0 10 15 2 Updated Oct 13, 2026
  • Rho-plugins Public

    Official scientific plugins and native runtime implementations for Rho

    YuLab-SMU/Rho-plugins's past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Oct 13, 2026
  • geneSetEmbedding Public

    Gene Set to Embedding Utilities

    YuLab-SMU/geneSetEmbedding's past year of commit activity
    R 7 2 0 0 Updated Oct 13, 2026
  • tidydr Public

    Unify Dimensionality Reduction Results

    YuLab-SMU/tidydr's past year of commit activity
    R 15 7 0 0 Updated Oct 13, 2026
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 13, 2026
  • Rho-core Public

    Generic Rho Host, operation journal, public protocol and SDK

    YuLab-SMU/Rho-core's past year of commit activity
    Rust 0 AGPL-3.0 0 0 0 Updated Oct 12, 2026
  • ggsc Public

    🧠 Visualizing Single Cell and Spatial Transcriptomics

    YuLab-SMU/ggsc's past year of commit activity
    R 51 12 0 0 Updated Oct 12, 2026
  • excercise Public
    YuLab-SMU/excercise's past year of commit activity
    HTML 0 1 0 0 Updated Oct 12, 2026
  • ggimage Public

    🎨 Use Images in ggplot2

    YuLab-SMU/ggimage's past year of commit activity
    R 179 36 1 0 Updated Oct 12, 2026
  • biomedical-knowledge-mining-book Public

    📖 Biomedical knowledge mining using GOSemSim and clusterProfiler

    YuLab-SMU/biomedical-knowledge-mining-book's past year of commit activity
    TeX 95 30 0 0 Updated Oct 11, 2026