Issues

• multiprocessing connection error

  WGLab/DeepMod2#41 · Filter by author YuanfengZhang opened on Aug 7, 2025

• Aborted (core dumped) error when running with fast5 files

  WGLab/DeepMod2#40 · Filter by author Moretta1 opened on Jul 14, 2025

• Empty output.per_site.aggregated and output.per_site files

  WGLab/DeepMod2#34 · Filter by author MH-Raza opened on Jan 22, 2025
  1

• Encountering errors running aligned BAM files

  WGLab/DeepMod2#32 · Filter by author tewing4 opened on Jan 14, 2025
  6

• No module named 'tensorflow.keras'

  WGLab/DeepMod2#30 · Filter by author taha1750 opened on Sep 6, 2024
  1

• Error！Deepmod2 analysis of human methylation

  WGLab/DeepMod2#29 · Filter by author zzangcy opened on Sep 2, 2024
  2

• About the compatiblity of Dorado basecalling model

  WGLab/DeepMod2#28 · Filter by author gxAlan233 opened on Aug 5, 2024
  4

• About guppy model

  WGLab/DeepMod2#25 · Filter by author HW-Superior opened on May 8, 2024
  3

• --model 'transformer_r10.4.1_5khz_v4.3' has error "UnboundLocalError: local variable 'model' referenced before assignment "

  WGLab/DeepMod2#24 · Filter by author kerenzhou062 opened on May 6, 2024
  1

• not running

  WGLab/DeepMod2#23 · Filter by author Jeff-Field opened on Apr 10, 2024
  4

• Error with BAM file on Command 3

  WGLab/DeepMod2#13 · Filter by author anish-taori opened on Sep 29, 2023
  1

• detect unknown modifications

  enhancement
  WGLab/DeepMod2#12 · Filter by author gerbenm opened on Sep 6, 2023
  3

• TypeError: 'NoneType' object is not subscriptable

  WGLab/DeepMod2#10 · Filter by author Arkadiy-Garber opened on Apr 8, 2023
  2

• The consistency of 5mC methylation generated by DeepMod and DeepMod2

  WGLab/DeepMod2#8 · Filter by author qiuyixmm opened on Dec 16, 2022

• methylation calling in non-CpG context (CHG and CHH)

  WGLab/DeepMod2#6 · Filter by author yusmiatiliau opened on Nov 15, 2022
  8