Skip to content
@TheJacksonLaboratory

The Jackson Laboratory

The Jackson Laboratory: Leading the search for tomorrow's cures.

Popular repositories Loading

  1. SVE SVE Public

    Python 51 11

  2. LIRICAL LIRICAL Public

    LIkelihood Ratio Interpretation of Clinical AbnormaLities

    Java 48 15

  3. ezomero ezomero Public

    A module with convenience functions for writing Python code that interacts with OMERO.

    Python 47 17

  4. Picky Picky Public

    Structural Variants Pipeline for Long Reads

    Perl 45 6

  5. zarrdataset zarrdataset Public

    A dataset for loading zarr files to be used in machine learning training pipelines

    Python 37 4

  6. JAXBD2K-ShortCourse JAXBD2K-ShortCourse Public

    This repository contains course materials from JAX-BD2K workshop.

    Shell 33 6

Repositories

Showing 10 of 401 repositories
  • cellnoor Public

    A web application and RESTful API that aggregates, displays, and allows comprehensive querying of single-cell biological data.

    TheJacksonLaboratory/cellnoor's past year of commit activity
    Rust 3 MIT 0 35 3 Updated Oct 15, 2026
  • sci-image-visualizer Public

    Browser-based scientific image visualization for Angular — OpenSeadragon (WSI), Plotly (2D/3D) and napari-js (WebGPU) rendering, region/annotation editing, and in-browser SAM segmentation. Extracted from jit-ui #80.

    TheJacksonLaboratory/sci-image-visualizer's past year of commit activity
    TypeScript 3 MIT 1 6 1 Updated Oct 15, 2026
  • rit-imageanalysis-containers Public

    Making it easier for users to spin up a Singularity container with image analysis tools from a slurm-based cluster

    TheJacksonLaboratory/rit-imageanalysis-containers's past year of commit activity
    Shell 5 MIT 3 2 0 Updated Oct 15, 2026
  • napari-js Public

    WebGPU rendering engine porting napari's visualization model to the browser.

    TheJacksonLaboratory/napari-js's past year of commit activity
    TypeScript 1 MIT 0 2 0 Updated Oct 15, 2026
  • geneweaver Public
    TheJacksonLaboratory/geneweaver's past year of commit activity
    JavaScript 1 Apache-2.0 0 0 1 Updated Oct 15, 2026
  • jds-ui-toolkit Public

    The JAX UI Toolkit workspace is a development environment engineered to streamline the creation, testing and deployment of shared UI components and packages across the JAX Data Science ecosystem.

    TheJacksonLaboratory/jds-ui-toolkit's past year of commit activity
    TypeScript 1 MIT 0 0 1 Updated Oct 14, 2026
  • endometriosis-visium-hd Public

    Analysis of Visium HD endometriosis data from the Courtois Lab at JAX.

    TheJacksonLaboratory/endometriosis-visium-hd's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 14, 2026
  • xenium-panel-convert Public

    A command-line utility for converting files to the formats accepted by the 10x Genomics Xenium Panel Designer.

    TheJacksonLaboratory/xenium-panel-convert's past year of commit activity
    Rust 2 MIT 0 9 1 Updated Oct 14, 2026
  • 5baseTAPS Public

    JAX-GT Nextflow DSL2 pipeline for whole-genome 5mC methylation and SNP detection via Illumina 5-base/TAPS chemistry, built on duplex UMI consensus sequencing (fgbio + bwa-mem2 + rastair + GATK HaplotypeCaller). An open-source DRAGEN 5-base WGS alternative.

    TheJacksonLaboratory/5baseTAPS's past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Oct 13, 2026
  • image-processing-ia Public Forked from datacarpentry/image-processing

    Image Processing with Python

    TheJacksonLaboratory/image-processing-ia's past year of commit activity
    HTML 0 128 0 0 Updated Oct 13, 2026
View all repositories