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1. scFoundry scFoundry Public

   A reproducible Nextflow DSL2 framework for standardized deployment, execution, and evaluation of single-cell foundation models (scFMs) with containerized environments and automated embedding infere…

   Python 10 1

2. FastCCC FastCCC Public

   A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics studies

   Python 27 4

3. iMAP iMAP Public

   A novel unsupervised batch removal framework, called iMAP, based on neural networks.

   Jupyter Notebook 35 4

4. GLIM GLIM Public

   Graph Local InfoMax for decoding multi-level relationships with human tissue-cell-molecule network

   Python 11 2

5. visar visar Public

   Jupyter Notebook 14 4