Genentech

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1. gReLU gReLU Public

   gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

   Python 365 60

2. SpatialAgent SpatialAgent Public

   A harness for spatial biology

   Python 219 27

3. equifold equifold Public

   Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

   Python 131 18

4. gneprop gneprop Public

   GNEprop is a graph neural network-based model to predict antibacterial activity from molecular structures in virtual screening settings.

   Jupyter Notebook 50 6

5. scallops scallops Public

   SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of Optical Pooled Screens (OPS) for biological data.

   Python 16 5

6. AssayBench AssayBench Public

   AssayBench: An Assay-Level Virtual Cell Benchmark for LLMs and Agents

   Python 16