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@FertigLab

FertigLab

Software projects in computational biology and bioinformatics in Elana Fertig's lab in Oncology Biostatistics and Bioinformatics at JHMI

Popular repositories Loading

  1. CoGAPS CoGAPS Public

    Bayesian MCMC matrix factorization algorithm

    C++ 74 16

  2. pycogaps pycogaps Public

    python API to the CoGAPS NMF package

    Python 22 7

  3. CancerInSilico CancerInSilico Public

    An R package for running cell-based models

    C++ 8 1

  4. dominoSignal dominoSignal Public

    A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity.

    R 8 3

  5. SingleCellTimeCourse SingleCellTimeCourse Public

    Head and neck cancer rna velocity scripts

    Jupyter Notebook 7 2

  6. scatterHatch scatterHatch Public

    R 7 4

Repositories

Showing 10 of 89 repositories
  • dominoSignal Public

    A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity.

    FertigLab/dominoSignal's past year of commit activity
    R 8 GPL-3.0 3 9 0 Updated Oct 15, 2026
  • staple-paper Public

    brain dataset analysis

    FertigLab/staple-paper's past year of commit activity
    Python 0 0 0 0 Updated Oct 12, 2026
  • llmize Public

    [elemaiz] - a nexflow module that runs report interpretation locally with llms

    FertigLab/llmize's past year of commit activity
    Python 1 0 0 1 Updated Oct 9, 2026
  • Uterine-fibroids-paper Public
    FertigLab/Uterine-fibroids-paper's past year of commit activity
    HTML 0 0 0 0 Updated Sep 29, 2026
  • fertiglab.github.io Public
    FertigLab/fertiglab.github.io's past year of commit activity
    SCSS 0 1 1 0 Updated Sep 15, 2026
  • onboarding Public
    FertigLab/onboarding's past year of commit activity
    Ruby 0 MIT 0 0 0 Updated Sep 4, 2026
  • CoGAPS Public

    Bayesian MCMC matrix factorization algorithm

    FertigLab/CoGAPS's past year of commit activity
    C++ 74 BSD-3-Clause 16 29 3 Updated Aug 12, 2026
  • pycogaps Public

    python API to the CoGAPS NMF package

    FertigLab/pycogaps's past year of commit activity
    Python 22 GPL-2.0 7 21 (1 issue needs help) 2 Updated Jul 24, 2026
  • context_specific_tfs_paper Public

    Analysis for the paper "Identifying Context-Specific Transcription Factor Targets from Prior Knowledge and Gene Expression Data"

    FertigLab/context_specific_tfs_paper's past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 21, 2026
  • senotypes-in-fibrosis-paper Public
    FertigLab/senotypes-in-fibrosis-paper's past year of commit activity
    R 0 MIT 0 0 0 Updated Jun 30, 2026
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