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This repository was archived by the owner on Aug 22, 2025. It is now read-only.
MAC installation problem #64
Description
Hi,
Thanks a lot for impressively fast tool. I am trying to install it on MAC but unfortunately I'm facing the following problem
g++ -std=c++0x -O3 -g -Wall -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c bamliquidator.m.cpp
g++ -std=c++0x -O3 -g -Wall -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -pthread -c bamliquidator.cpp
g++ -O3 -g -Wall -o bamliquidator bamliquidator.o bamliquidator.m.o -lbam -lz -lpthread
ld: library not found for -lbam
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [bamliquidator] Error 1
I followed the instructions for MAC here but I am not able to get around the problem. I also tried instruction from #53 .
One more issue is, I couldn't install samtools as suggested in wiki page, I installed it on my own and symlinked to /usr/local/include.
Any help would be greatly appreciated.
Thank you.
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