Issues

• Remove github.com/lunny/log as a dependency from genbank.go

  enhancementneeds-triagestale
  bebop/poly#448 · Filter by author ethanholz opened on Dec 10, 2025
  1

• Turn on revive linter in golangci config

  devopsenhancementgood first issuehelp wantedlow prioritystale
  bebop/poly#442 · Filter by author carreter opened on Feb 2, 2024
  1

• Genbank parser needs heavy refactor or a rewrite

  enhancementhardmedium prioritystale
  bebop/poly#434 · Filter by author carreter opened on Dec 20, 2023
  10

• Proposal - New external package - rebased

  enhancementhelp wantedintermediatemedium prioritystale
  bebop/poly#426 · Filter by author TimothyStiles opened on Dec 12, 2023
  2

• Proposal: Create a biological reviewers group

  needs-triageproposalstale
  bebop/poly#422 · Filter by author TimothyStiles opened on Dec 12, 2023
  2

• Each fragment in a PCR amplification should have a circular tag

  proposalstale
  bebop/poly#413 · Filter by author Koeng101 opened on Dec 6, 2023
  1

• Tutorial and example tests for refactored golden gate cloning

  needs-triagestale
  bebop/poly#399 · Filter by author TimothyStiles opened on Nov 11, 2023
  1

• Genbank parser doesn't handle feature attributes with colliding names.

  bughardhelp wantedhigh prioritystale
  bebop/poly#383 · Filter by author TimothyStiles opened on Oct 6, 2023
  5

• Refactor clone package

  enhancementhigh priorityintermediatestaleux
  bebop/poly#367 · Filter by author carreter opened on Sep 23, 2023
  5

  

• Create Automated Benchmarking Suite

  devopshardlow prioritystale
  bebop/poly#366 · Filter by author TimothyStiles opened on Sep 23, 2023
  5

• Improve and standardize parsing API

  enhancementhardhigh prioritystaleux
  bebop/poly#364 · Filter by author carreter opened on Sep 23, 2023 · v1.0
  1

  

• Write more thorough explanation of alignment algorithms in align.go

  documentationintermediatelow prioritystale
  bebop/poly#363 · Filter by author carreter opened on Sep 23, 2023 · v1.0
  1

• Create a tutorial series around a real-world, working example

  documentationhardhigh prioritystale
  bebop/poly#362 · Filter by author carreter opened on Sep 23, 2023 · v1.0
  4

• Implement LinearFold for prediction of RNA secondary structure

  easyenhancementmedium prioritystale
  bebop/poly#361 · Filter by author carreter opened on Sep 23, 2023 · v1.0
  6

• Implement Gibson Assembly

  enhancementhigh priorityintermediatestale
  bebop/poly#359 · Filter by author carreter opened on Sep 23, 2023 · v1.0
  6

  

• Pileup parsing deletion with .

  enhancementhardmedium prioritystale
  bebop/poly#355 · Filter by author Koeng101 opened on Sep 21, 2023 · v1.0
  4

  

• Feature.GetSequence() always returns a nil error value

  bugeasygood first issuehelp wantedlow prioritystale
  bebop/poly#352 · Filter by author carreter opened on Sep 20, 2023 · v1.0
  7

• Common Genbank Feature.Type values should be enumerated

  easyenhancementgood first issuehelp wantedlow prioritystale
  bebop/poly#351 · Filter by author carreter opened on Sep 20, 2023
  4

• Create top-level types.go to define types shared across packages

  easyproposalquestion
  bebop/poly#347 · Filter by author carreter opened on Sep 15, 2023
  6

• Improvements to issue/PR labeling/management

  devopsdocumentationenhancementintermediatemedium priority
  bebop/poly#346 · Filter by author carreter opened on Sep 15, 2023
  16

  

• Gff.AddFeature() code is misleading and mutates Feature state

  bugeasygood first issuemedium prioritystale
  bebop/poly#342 · Filter by author carreter opened on Sep 11, 2023 · v1.0
  5

• slow5 doesn't detect newline

  bugeasymedium prioritystale
  bebop/poly#327 · Filter by author Koeng101 opened on Aug 8, 2023 · v1.0
  4

  

• Failed to parse Saccharomyces cerevisiae S288C chromosome IX

  bughigh priorityintermediate
  bebop/poly#313 · Filter by author Koeng101 opened on May 29, 2023 · v1.0
  8

• PDBx Parser

  enhancementhardmedium priority
  bebop/poly#297 · Filter by author TimothyStiles opened on Mar 21, 2023 · v1.0
  10

  

• Default codon tables

  enhancementgood first issuehelp wantedintermediatelow prioritystale
  bebop/poly#247 · Filter by author Koeng101 opened on Apr 5, 2022 · v1.0
  6